, including all inherited members.
| arrayEnd() const | ugdiss::TSA< TOKEN > | [inline] |
| ArrayEntry typedef | ugdiss::TSA< TOKEN > | |
| arrayStart() const | ugdiss::TSA< TOKEN > | [inline] |
| aveIndexEntrySize() const | ugdiss::TSA< TOKEN > | [inline] |
| bitset_pointer typedef | ugdiss::TSA< TOKEN > | |
| BitSetCachingThreshold | ugdiss::TSA< TOKEN > | [protected] |
| bsc | ugdiss::TSA< TOKEN > | |
| BSC_t typedef | ugdiss::TSA< TOKEN > | |
| corpus | ugdiss::TSA< TOKEN > | [protected] |
| corpusSize | ugdiss::TSA< TOKEN > | [protected] |
| dataEnd() const | ugdiss::TSA< TOKEN > | |
| dump(std::ostream &out, TokenIndex const &T) const | ugdiss::TSA< TOKEN > | |
| endArray | ugdiss::TSA< TOKEN > | [protected] |
| fillBitSet(std::vector< TOKEN > const &phrase, bdBitset &dest) const | ugdiss::TSA< TOKEN > | |
| fillBitSet(TOKENconst *key, size_t keyLen, bdBitset &dest) const | ugdiss::TSA< TOKEN > | |
| find(TOKENconst *start, size_t len) const | ugdiss::TSA< TOKEN > | [inline] |
| find_end(char const *lo, char const *const upX, TOKENconst *const refStart, int refLen, size_t d) const | ugdiss::TSA< TOKEN > | [protected] |
| find_longer(char const *lo, char const *const upX, TOKENconst *const refStart, int refLen, size_t d) const | ugdiss::TSA< TOKEN > | [protected] |
| find_start(char const *lo, char const *const upX, TOKENconst *const refStart, int refLen, size_t d) const | ugdiss::TSA< TOKEN > | [protected] |
| findBranches(TOKENconst *base, bitvector const &terminals, std::vector< tree_iterator > &dest) const | ugdiss::TSA< TOKEN > | |
| findTree(TOKENconst *treeStart, TOKENconst *treeEnd, bitvector const *filter) const | ugdiss::TSA< TOKEN > | |
| getBitSet(TOKENconst *startKey, size_t keyLen) const | ugdiss::TSA< TOKEN > | |
| getCorpus() const | ugdiss::TSA< TOKEN > | |
| getCorpusSize() const | ugdiss::TSA< TOKEN > | |
| getCounts(char const *p, char const *const q, count_type &sids, count_type &raw) const | ugdiss::imTSA< TOKEN > | [inline, virtual] |
| getSequence(::uint64_t pid, TokenIndex const &V) const | ugdiss::TSA< TOKEN > | |
| getSequence(::uint64_t pid) const | ugdiss::TSA< TOKEN > | |
| getSequenceId(typename std::vector< TOKEN >::const_iterator const &pstart, typename std::vector< TOKEN >::const_iterator const &pstop) const | ugdiss::TSA< TOKEN > | |
| getSequenceId(TOKENconst *t, ushort plen) const | ugdiss::TSA< TOKEN > | |
| getSequenceLength(::uint64_t) const | ugdiss::TSA< TOKEN > | |
| getSequenceStart(::uint64_t) const | ugdiss::TSA< TOKEN > | |
| imTSA() | ugdiss::imTSA< TOKEN > | [inline] |
| imTSA(boost::shared_ptr< Ttrack< TOKEN > const > c, bdBitset const *filt, std::ostream *log=NULL, size_t threads=0) | ugdiss::imTSA< TOKEN > | [inline] |
| imTSA(imTSA< TOKEN > const &prior, boost::shared_ptr< imTtrack< TOKEN > const > const &crp, std::vector< id_type > const &newsids, size_t const vsize) | ugdiss::imTSA< TOKEN > | [inline] |
| indexSize | ugdiss::TSA< TOKEN > | [protected] |
| lower_bound(typename std::vector< TOKEN >::const_iterator const &keyStart, typename std::vector< TOKEN >::const_iterator const &keyStop) const | ugdiss::TSA< TOKEN > | |
| lower_bound(TOKENconst *keyStart, TOKENconst *keyStop) const | ugdiss::TSA< TOKEN > | |
| lower_bound(TOKENconst *keyStart, int keyLen) const | ugdiss::TSA< TOKEN > | |
| markOccurrences(char const *lo, char const *up, size_t len, bitvector &bitset, bool markOnlyStartPosition) const | ugdiss::TSA< TOKEN > | |
| numTokens | ugdiss::TSA< TOKEN > | [protected] |
| rawCnt(char const *p, char const *const q) const | ugdiss::imTSA< TOKEN > | [inline, virtual] |
| rawCnt2(TOKENconst *keyStart, size_t keyLen) const | ugdiss::TSA< TOKEN > | |
| readEntry(char const *p, tsa::ArrayEntry &I) const | ugdiss::TSA< TOKEN > | |
| readOffset(char const *p, char const *q, uint16_t &offset) const | ugdiss::imTSA< TOKEN > | [inline, virtual] |
| readOffset(char const *p, char const *q,::uint64_t &offset) const | ugdiss::imTSA< TOKEN > | [inline, virtual] |
| readSid(char const *p, char const *q, id_type &sid) const | ugdiss::imTSA< TOKEN > | [inline, virtual] |
| readSid(char const *p, char const *q,::uint64_t &sid) const | ugdiss::imTSA< TOKEN > | [inline, virtual] |
| sanityCheck() const | ugdiss::imTSA< TOKEN > | |
| sanityCheck1() const | ugdiss::TSA< TOKEN > | |
| save_as_mm_tsa(std::string fname) const | ugdiss::imTSA< TOKEN > | [inline] |
| setBits(char const *startRange, char const *endRange, boost::dynamic_bitset< uint64_t > &bs) const | ugdiss::TSA< TOKEN > | |
| setTokenBits(char const *startRange, char const *endRange, size_t len, bitvector &bs) const | ugdiss::TSA< TOKEN > | |
| sntCnt(char const *p, char const *const q) const | ugdiss::imTSA< TOKEN > | |
| startArray | ugdiss::TSA< TOKEN > | [protected] |
| suffixAt(char const *p, TokenIndex const *V=NULL, size_t maxlen=0) const | ugdiss::TSA< TOKEN > | |
| suffixAt(ArrayEntry const &I, TokenIndex const *V=NULL, size_t maxlen=0) const | ugdiss::TSA< TOKEN > | |
| Token typedef | ugdiss::TSA< TOKEN > | |
| tree_iterator class | ugdiss::imTSA< TOKEN > | [friend] |
| TSA_tree_iterator< TKN > class | ugdiss::TSA< TOKEN > | [friend] |
| upper_bound(typename std::vector< TOKEN >::const_iterator const &keyStart, typename std::vector< TOKEN >::const_iterator const &keyStop) const | ugdiss::TSA< TOKEN > | |
| upper_bound(TOKENconst *keyStart, int keyLength) const | ugdiss::TSA< TOKEN > | |
| ~TSA() | ugdiss::TSA< TOKEN > | [inline, virtual] |
